Nextflow workflow report

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: null.

The full error message was:

Error executing process > 'NFCORE_SEQINSPECTOR:SEQINSPECTOR:FASTQC (SAMPLE_PAIRED_END_1_1)'

Caused by:
  Process requirement exceeds available memory -- req: 36 GB; avail: 16 GB


Command executed:

  printf "%s %s\n" Bpacificus-ATCC10987-rep1-sWGS-MiSeqi100-241111_S1_L001_R1_001.fastq.gz SAMPLE_PAIRED_END_1_1_1.gz Bpacificus-ATCC10987-rep1-sWGS-MiSeqi100-241111_S1_L001_R2_001.fastq.gz SAMPLE_PAIRED_END_1_1_2.gz | while read old_name new_name; do
      [ -f "${new_name}" ] || ln -s $old_name $new_name
  done
  
  fastqc \
      --quiet \
      --threads 6 \
      --memory 6144.0 \
      SAMPLE_PAIRED_END_1_1_1.gz SAMPLE_PAIRED_END_1_1_2.gz
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_SEQINSPECTOR:SEQINSPECTOR:FASTQC":
      fastqc: $( fastqc --version | sed '/FastQC v/!d; s/.*v//' )
  END_VERSIONS

Command exit status:
  -

Command output:
  (empty)

Work dir:
  /Users/agrimabhatt/seqinspector/work/fc/f00808dbb700b1ed46bfef33d9a3fd

Container:
  quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`