The exit status of the task that caused the workflow execution to fail was: null.
The full error message was:
Error executing process > 'NFCORE_SEQINSPECTOR:SEQINSPECTOR:FASTQC (SAMPLE_PAIRED_END_1_1)'
Caused by:
Process requirement exceeds available memory -- req: 36 GB; avail: 16 GB
Command executed:
printf "%s %s\n" Bpacificus-ATCC10987-rep1-sWGS-MiSeqi100-241111_S1_L001_R1_001.fastq.gz SAMPLE_PAIRED_END_1_1_1.gz Bpacificus-ATCC10987-rep1-sWGS-MiSeqi100-241111_S1_L001_R2_001.fastq.gz SAMPLE_PAIRED_END_1_1_2.gz | while read old_name new_name; do
[ -f "${new_name}" ] || ln -s $old_name $new_name
done
fastqc \
--quiet \
--threads 6 \
--memory 6144.0 \
SAMPLE_PAIRED_END_1_1_1.gz SAMPLE_PAIRED_END_1_1_2.gz
cat <<-END_VERSIONS > versions.yml
"NFCORE_SEQINSPECTOR:SEQINSPECTOR:FASTQC":
fastqc: $( fastqc --version | sed '/FastQC v/!d; s/.*v//' )
END_VERSIONS
Command exit status:
-
Command output:
(empty)
Work dir:
/Users/agrimabhatt/seqinspector/work/fc/f00808dbb700b1ed46bfef33d9a3fd
Container:
quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
nextflow run main.nf -profile test,docker --input /Users/agrimabhatt/pipeline/testdata/testdata/Miseq_PairedEnd/samplesheet.csv --outdir result -with-report
51ae67c7a1786a7937e7c520871990bdc071764c-7001-4ac2-8441-9121919d2062These plots give an overview of the distribution of resource usage for each process.
This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.